**
You need to have boost (e.g. sudo apt-get install libboost-dev) and openmp libraries installed. You can see detailed installation commands in the dockers/debian9/Dockerfile.**
sudo apt-get install libomp-dev
sudo apt-get install libboost-dev
sudo apt-get install openmp
velocyto.R
RNA velocity estimation in R
System requirements
velocyto.R can be installed on unix-flavored systems, and requires the following key elements:
C++11
Open MP support
boost libaries
igraph library
hdf5c++ library (as required by the h5 R package to support loom files)
Installation
The easiest way to install velocyto.R is using devtools::install_github() from R:
library(devtools)
install_github("velocyto-team/velocyto.R")
You need to have boost (e.g. sudo apt-get install libboost-dev) and openmp libraries installed. You can see detailed installation commands in the dockers/debian9/Dockerfile.
Dockers
If you are having trouble installing the package on your system, you can build a docker instance that can be used on a wide range of systems and cloud environments. To install docker framework on your system see installation instruction. After installing the docker system, use the following commands to build a velocyto.R docker instance:
cd velocyto.R/dockers/debian9
docker build -t velocyto .
docker run --name velocyto -it velocyto
