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WHU服务器下载SRA数据库方案

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WHU服务器下载SRA数据库方案

文章目录

一、你需要什么二、你要怎么做

1. 准备下载索引2. wget -i list.txt 注意


提示:这里可以添加本文要记录的大概内容:
例如:随着人工智能的不断发展,机器学习这门技术也越来越重要,很多人都开启了学习机器学习,本文就介绍了机器学习的基础内容。


提示:以下是本篇文章正文内容,下面案例可供参考

一、你需要什么

177 地址下工作,一个明确的SRA。

二、你要怎么做 1. 准备下载索引

比如SRP266461(示例):
https://www.ncbi.nlm.nih.gov/sra?term=SRP266461


Send to —— File —— RunInfo

得到一个 SraRunInfo.csv, 其中就包含download.path


提出来,做一个TXT

$ cat list.txt 
download_path
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953231/SRR11953231.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953232/SRR11953232.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953233/SRR11953233.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953234/SRR11953234.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953235/SRR11953235.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953236/SRR11953236.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953237/SRR11953237.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953242/SRR11953242.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953243/SRR11953243.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953244/SRR11953244.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953245/SRR11953245.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953246/SRR11953246.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953247/SRR11953247.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953248/SRR11953248.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953249/SRR11953249.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953250/SRR11953250.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953251/SRR11953251.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953252/SRR11953252.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953253/SRR11953253.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953254/SRR11953254.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953255/SRR11953255.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953256/SRR11953256.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953257/SRR11953257.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953258/SRR11953258.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953259/SRR11953259.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953260/SRR11953260.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953261/SRR11953261.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953262/SRR11953262.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953263/SRR11953263.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953264/SRR11953264.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953265/SRR11953265.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953266/SRR11953266.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953267/SRR11953267.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953270/SRR11953270.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953271/SRR11953271.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953272/SRR11953272.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953273/SRR11953273.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953274/SRR11953274.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953275/SRR11953275.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953276/SRR11953276.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953277/SRR11953277.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953278/SRR11953278.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953279/SRR11953279.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953280/SRR11953280.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953281/SRR11953281.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953282/SRR11953282.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953283/SRR11953283.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953284/SRR11953284.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953285/SRR11953285.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953286/SRR11953286.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953287/SRR11953287.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953288/SRR11953288.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953289/SRR11953289.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953290/SRR11953290.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953291/SRR11953291.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953292/SRR11953292.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953293/SRR11953293.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953294/SRR11953294.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953295/SRR11953295.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953296/SRR11953296.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR11953297/SRR11953297.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953298/SRR11953298.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953299/SRR11953299.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953300/SRR11953300.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953301/SRR11953301.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953302/SRR11953302.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953303/SRR11953303.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953304/SRR11953304.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953305/SRR11953305.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953306/SRR11953306.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955960/SRR12955960.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955961/SRR12955961.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955962/SRR12955962.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955963/SRR12955963.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955964/SRR12955964.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955965/SRR12955965.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955966/SRR12955966.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955967/SRR12955967.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955968/SRR12955968.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955969/SRR12955969.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955970/SRR12955970.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955971/SRR12955971.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955972/SRR12955972.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955973/SRR12955973.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955974/SRR12955974.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955975/SRR12955975.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955976/SRR12955976.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955977/SRR12955977.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955978/SRR12955978.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955979/SRR12955979.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955980/SRR12955980.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955981/SRR12955981.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955982/SRR12955982.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955983/SRR12955983.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955984/SRR12955984.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955985/SRR12955985.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955986/SRR12955986.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955987/SRR12955987.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955988/SRR12955988.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955989/SRR12955989.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955990/SRR12955990.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955991/SRR12955991.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955992/SRR12955992.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-21/SRR12955993/SRR12955993.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR12955994/SRR12955994.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR12955995/SRR12955995.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953268/SRR11953268.1
https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-20/SRR11953269/SRR11953269.1
2. wget -i list.txt

代码如下(示例):

$  wget -i list.txt 
list.txt: Invalid URL download_path: Scheme missing
--2022-02-08 21:26:35--  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953231/SRR11953231.1
Resolving sra-downloadb.be-md.ncbi.nlm.nih.gov (sra-downloadb.be-md.ncbi.nlm.nih.gov)... 130.14.250.28, 130.14.250.26, 130.14.250.18
Connecting to sra-downloadb.be-md.ncbi.nlm.nih.gov (sra-downloadb.be-md.ncbi.nlm.nih.gov)|130.14.250.28|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 4217417132 (3.9G) [binary/octet-stream]
Saving to: ‘SRR11953231.1.1’

100%[=============================================================================================================================>] 4,217,417,132 12.4MB/s   in 5m 35s 

2022-02-08 21:32:11 (12.0 MB/s) - ‘SRR11953231.1.1’ saved [4217417132/4217417132]

--2022-02-08 21:32:11--  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11953232/SRR11953232.1
Reusing existing connection to sra-downloadb.be-md.ncbi.nlm.nih.gov:443.
HTTP request sent, awaiting response... 200 OK
Length: 5155963863 (4.8G) [binary/octet-stream]
Saving to: ‘SRR11953232.1’

 6% [=======>                                                                                                                        ] 342,538,052 11.8MB/s   in 5m 34s 
注意

WHU的服务器在177的地址搞,有时候会遇到权限问题,bing一下即可。

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