Rstudio版本1.0.153
操作系统：RedHat7.2
用sudo权限的ec2-user用户操作
R版本3.4.2
编译器安装
sudo yum -y install gcc sudo yum -y install gcc-c++ sudo yum -y install gcc-gfortran
配置Java的环境变量
JAVA_HOME=/usr/java/jdk1.7.0_67-cloudera CLASSPATH=$JAVA_HOME/lib/dt.jar:$JAVA_HOME/lib/tool.jar:$CLASSPATH PATH=$JAVA_HOME/bin:$PATH
安装R编译需要的依赖包
sudo yum -y install readline-devel sudo yum -y install libXt-devel sudo yum -y install bzip2-devel sudo yum -y install xz-devel.x86_64 sudo yum -y install libcurl-devel sudo yum -y install texinfo.x86_64 texlive-pdftex-doc.noarch tex texlive-scheme-basic
下载R源码至服务器
[ec2-user@ip-168-33-22-46 ~]$ wget https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/base/R-3/R-3.4.2.tar.gz --2017-10-06 10:14:49-- https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/base/R-3/R-3.4.2.tar.gz … 2017-10-06 10:15:00 (6.85 MB/s) - ‘R-3.4.2.tar.gz’ saved [30255544/30255544] [ec2-user@ip-168-33-22-46 ~]$
R-3.4.2.tar.gz压缩包解压至当前目录
[ec2-user@ip-168-33-22-46 ec2-user]# tar -zxvf R-3.4.2.tar.gz
进入R-3.4.2目录执行命令进行配置
[ec2-user@ip-168-33-22-46 ec2-user]# cd R-3.4.2 [ec2-user@ip-168-33-22-46 R-3.4.2]# sudo ./configure --prefix=/usr/local/R-3.4.2 --enable-R-shlib
配置成功后，执行如下命令进行编译并安装到指定目录
[ec2-user@ip-168-33-22-46 R-3.4.2]# sudo make && make install
编辑/etc/profile文件，在文件末尾增加如下内容
R_HOME=/usr/local/R-3.4.2 PATH=$R_HOME/bin:$PATH
使环境变量立即生效
[root@ip-168-33-22-46 R-3.4.2]# source /etc/profile
验证环境变量是否配置成功
[root@ip-168-33-22-46 R-3.4.2]# echo $R_HOME [root@ip-168-33-22-46 R-3.4.2]# R
测试Rstudio代码运行效果
将test.R文件在Linux服务器上运行
library(sparklyr)
sc <- spark_connect(master = "local", spark_home = Sys.getenv("SPARK_HOME","/opt/cloudera/parcels/SPARK2/lib/spark2"))
count_lines <- function(sc, file) {
spark_context(sc) %>%
invoke("textFile", file, 1L) %>%
invoke("count")
}
count_lines(sc, "file:///home/ec2-user/aaa.txt")
spark_disconnect(sc)
print("Hello R")
在命令行运行test.R文件
[root@ip-168-33-22-46 ec2-user]# Rscript test.R 运行结果：常见问题
常见问题1：
configure: error: in `/home/ec2-user/R-3.4.2': configure: error: C++ preprocessor "/lib/cpp" fails sanity check See `config.log' for more details
解决方法：由于c++编译器的相关package没有安装导致
[ec2-user@ip-168-33-22-46 R-3.4.2]$ sudo yum install gcc-c++
常见问题2：
checking for main in -ltermcap... no checking for main in -ltermlib... no checking for rl_callback_read_char in -lreadline... no configure: error: --with-readline=yes (default) and headers/libs are not available
解决方法：因为需要依赖readline-devel包
[ec2-user@ip-168-33-22-46 R-3.4.2]$ sudo yum -y install readline-devel
常见问题3：
checking for Fortran 77 libraries of fc... checking how to get verbose linking output from gcc -std=gnu99... -v checking for C libraries of gcc -std=gnu99... -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... configure: error: in `/home/ec2-user/R-3.4.2': configure: error: cannot compile a simple Fortran program See `config.log' for more details
解决方法：由于需要依赖gcc-gfortran包的缘故
[ec2-user@ip-168-33-22-46 R-3.4.2]$ sudo yum -y install gcc-gfortran
常见问题4：
checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for X... no configure: error: --with-x=yes (default) and X11 headers/libs are not available
解决方法：需要依赖libXt-devel包
[ec2-user@ip-168-33-22-46 R-3.4.2]$ sudo yum -y install libXt-devel
常见问题5：
checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... no configure: error: "liblzma library and headers are required"
解决方法：
[ec2-user@ip-168-33-22-46 R-3.4.2]$ sudo yum -y install xz-devel.x86_64
常见问题6：
checking mmap support for zlib... yes checking for BZ2_bzlibVersion in -lbz2... no checking whether bzip2 support suffices... configure: error: bzip2 library and headers are required
解决方法：
[ec2-user@ip-168-33-22-46 R-3.4.2]$ sudo yum -y install bzip2-devel
常见问题7：
checking curl/curl.h presence... no checking for curl/curl.h... no configure: error: libcurl >= 7.22.0 library and headers are required with support for https
解决方法：
[ec2-user@ip-168-33-22-46 R-3.4.2]$ sudo yum -y install libcurl-devel
常见问题8：
configure: WARNING: you cannot build info or HTML versions of the R manuals configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of vignettes and help pages
解决方法：
[ec2-user@ip-172-31-26-102 R-3.4.2]**$** sudo yum -y install texinfo.x86_64 texlive-pdftex-doc.noarch tex texlive-scheme-basic
常见问题9：
configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally
解决方法：
下载inconsolata包
wget http://mirror.lzu.edu.cn/CTAN/fonts/inconsolata.zip
解压inconsolata.zip，将压缩包内容拷贝至/usr/share/texlive/texmf-dist/tex/latex
[ec2-user@ip-168-33-22-46 ~]$ unzip inconsolata.zip [ec2-user@ip-168-33-22-46 ~]$ cd inconsolata [ec2-user@ip-168-33-22-46 inconsolata]$ sudo scp -r * /usr/share/texlive/texmf-dist/tex/latex
执行命令刷新sty：sudo mktexlsr或者sudo texhash
[ec2-user@ip-168-33-22-46 inconsolata]$ sudo mktexlsr mktexlsr: Updating /usr/share/texlive/texmf/ls-R... mktexlsr: Updating /usr/share/texlive/texmf-config/ls-R... mktexlsr: Updating /usr/share/texlive/texmf-dist/ls-R... mktexlsr: Updating /usr/share/texlive/texmf-local///ls-R... mktexlsr: Updating /usr/share/texlive/texmf-var/ls-R... mktexlsr: Done.
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